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Protein Service Analysis

Tariffs for proteomics and protein analysis services

As of 01. July 2021 new tariffs are applied for Proteomics/Protein Analytical Services.

  • Internal UZH/ETHZ researchers: see table below. All prices in CHF (excl. VAT)
  • External academics and companies: please contact proteomics at fgcz.ethz.ch


FGCZ offers a large selection of services using state-of-the-art sample preparation, data acquisition, and data analysis workflows.
Based on the application, the services are grouped into "Service Types" (see the table below).
Follow this link for an overview of our Proteomics offer, or the links in the table for the complete list of services, and for more detailed information.


Service Type Type of analyses
Proteomics / Protein Services Protein identification and quantification. Analysis of post-translational modifications. HPLC analyses
Interaction Proteomics Affinity purification (AP-MS) and Proximity labeling experiments
Intact Mass Determination Mass determination of peptide, proteins, and biomolecules
Amino Acid AnalysisQuantification of amino acids, characterization of unnatural amino acids
Glycan/Glycoprotein Characterization of glycans, glycopeptides, and glycoproteins




Service Type Service Workflow Unit UZH/ETHZ Remarks
Proteomics / Protein services Protein/Peptide Identification SP3/Gel-based /on beads /in-solution digestion + standard LC-MS/MS analysis per gel band/sample 140.00
Protein/Peptide Identification PreOmics iST digestion + standard LC-MS/MS analysis (Q-Exactive) per sample 172.10
Protein/Peptide Identification PreOmics iST digestion + "deep" LC-MS/MS analysis (Orbitrap Lumos) per sample 202.10
Protein/Peptide Identification FASP/PCT digestion + standard LC-MS/MS analysis per sample 207.00
Label-Free quantification Experimental design + Protein digestion + "deep" LC-MS/MS analysis + MS1 or MS2-based quantification individual set up 130 CHF/sample + 830 CHF/experiment B-Fabric Project required
Label-Free quantification - Phospho Protein digestion + "deep" LC-MS/MS analysis + MS1 or MS2-based quantification. Phosphoenrichment steps are required. individual set up please contact proteomics at fgcz.ethz.ch B-Fabric Project required
Analysis of selected PTMs Applicable only to a selection of post-translational modifications. PTMs may require enrichment individual set up please contact proteomics at fgcz.ethz.ch
N-Terminal characterization Characterization of protein N-Terminals on purified proteins or complex proteomes individual set up please contact proteomics at fgcz.ethz.ch
Disulfide bridge assignment Determination of S-S bonds on purified proteins. Multiple proteolytic enzymes may be required individual set up please contact proteomics at fgcz.ethz.ch
Targeted Quantification Detection of changes of protein abundances in biological samples. individual set up please contact proteomics at fgcz.ethz.ch B-Fabric Project required
HPLC Fractionation SEC / HILIC / HighPH RP - please contact proteomics at fgcz.ethz.ch
Interaction Proteomics Protein-protein interaction - Pilot experiment Protein digestion + standard LC-MS/MS analysis + spectral counting per sample 140.00
Protein-protein interaction - main experiment Experimental design + Protein digestion + standard LC-MS/MS analysis + statistical analysis individual set up 104 CHF/sample + 830 CHF/experiment
Intact Mass Determination Peptides / Proteins ESI-MS or MALDI-MS + report per sample 72.00
Peptides / Proteins LC-MS + report per sample 86.00
Protein-metal complexes ESI-MS, MALDI-MS + report per sample 72.00
Antibody characterization ESI-MS, MALDI-MS + report per sample 72.00
Antibody characterization LC-MS + report per sample 86.00
Antibody characterization glycan release (if required) per sample 35.00
Others any other type of mass determination. individual set up Please please contact proteomics at fgcz.ethz.ch
Amino Acid Analysis Composition / quantification Amino acid composition / quantification of protein/peptide hydrolysates per sample 72.00
Free amino acids Analysis of free amino acids in cell culture media and biofluids per sample 72.00
Unnatural amino acids Characterization of uncommon amino acids per sample 72.00 extra charges may apply
Glycan / Glycoprotein Identification of glycoproteins Gel-based /on beads /in-solution digestion + standard LC-MS/MS analysis per sample 140.00
N-‚Äčlinked glycans site occupancy Identify N-glycosylation sites. It includes glycan release with PNGase F (w/o heavy water)) individual set up please contact proteomics at fgcz.ethz.ch
Glycopeptide analysis Site-specific glycosylation - glycopeptide analysis (identify what kind of glycan is attached to which site of the protein) individual set up please contact proteomics at fgcz.ethz.ch
Characterization of N-‚Äčlinked glycans Release, permethylation, MALDI MS and annotation individual set up please contact proteomics at fgcz.ethz.ch




Created by schmidt. Last Modification: Friday November 5, 2021 12:49:19 CET by paolo.