Mapping Preview

Calls both the Map Reads and the Bam Statistics. Its purpose is to run a mapper on a subset of the reads and get a summary report of the mapping.

In the options the application accepts any values that are also accepted by

• Map Reads
• BAM Statistics

the additional parameter is

• mapMethod=<mapping method> choose any of the available mapping methods

By default this application sets the parameter

• nReads=1000000